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Search results (108)

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HI-FEVER: a Nextflow pipeline for the high-throughput discovery and annotation of endogenous viral elements.

Muñoz-Baena L. et al, (2025), Bioinformatics, 41

Endogenous viral elements in termite genomes reveal extensive diversity of deltaviruses and provide insights into their origins.

Barreat JGN. et al, (2025), Cell Rep, 44

It should be free to apply to graduate school.

Fernando B. et al, (2025), Nature, 643

Deep mining reveals the diversity of endogenous viral elements in vertebrate genomes.

Nino Barreat JG. and Katzourakis A., (2024), Nat Microbiol, 9, 3013 - 3024

Limitations of current high-throughput sequencing technologies lead to biased expression estimates of endogenous retroviral elements.

Kitsou K. et al, (2024), NAR Genom Bioinform, 6

Ecological and evolutionary dynamics of cell-virus-virophage systems.

Nino Barreat JG. and Katzourakis A., (2024), PLoS Comput Biol, 20

The evolution of SARS-CoV-2.

Markov PV. et al, (2023), Nat Rev Microbiol, 21, 361 - 379

Four principles to establish a universal virus taxonomy.

Simmonds P. et al, (2023), PLoS Biol, 21

Discovery of novel papillomaviruses in the critically endangered Malayan and Chinese pangolins.

Nino Barreat JG. et al, (2023), Biol Lett, 19

Evolutionary Analysis of Placental Orthologues Reveals Two Ancient DNA Virus Integrations.

Nino Barreat JG. and Katzourakis A., (2022), J Virol, 96

A framework for reconstructing SARS-CoV-2 transmission dynamics using excess mortality data.

Ghafari M. et al, (2022), Nat Commun, 13

Paleovirology of the DNA viruses of eukaryotes.

Barreat JGN. and Katzourakis A., (2022), Trends Microbiol, 30, 281 - 292

Purifying Selection Determines the Short-Term Time Dependency of Evolutionary Rates in SARS-CoV-2 and pH1N1 Influenza.

Ghafari M. et al, (2022), Mol Biol Evol, 39

A mechanistic evolutionary model explains the time-dependent pattern of substitution rates in viruses.

Ghafari M. et al, (2021), Curr Biol, 31, 4689 - 4696.e5

Lessons for preparedness and reasons for concern from the early COVID-19 epidemic in Iran.

Ghafari M. et al, (2021), Epidemics, 36

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