Deep mining reveals the diversity of endogenous viral elements in vertebrate genomes.
Journal article
Nino Barreat JG. and Katzourakis A., (2024), Nat Microbiol
Limitations of current high-throughput sequencing technologies lead to biased expression estimates of endogenous retroviral elements.
Journal article
Kitsou K. et al, (2024), NAR Genom Bioinform, 6
Ecological and evolutionary dynamics of cell-virus-virophage systems.
Journal article
Nino Barreat JG. and Katzourakis A., (2024), PLoS Comput Biol, 20
Four principles to establish a universal virus taxonomy.
Journal article
Simmonds P. et al, (2023), PLoS Biol, 21
Discovery of novel papillomaviruses in the critically endangered Malayan and Chinese pangolins.
Journal article
Nino Barreat JG. et al, (2023), Biol Lett, 19
Evolutionary Analysis of Placental Orthologues Reveals Two Ancient DNA Virus Integrations.
Journal article
Nino Barreat JG. and Katzourakis A., (2022), J Virol
A framework for reconstructing SARS-CoV-2 transmission dynamics using excess mortality data.
Journal article
Ghafari M. et al, (2022), Nat Commun, 13
Purifying Selection Determines the Short-Term Time Dependency of Evolutionary Rates in SARS-CoV-2 and pH1N1 Influenza.
Journal article
Ghafari M. et al, (2022), Mol Biol Evol, 39
Paleovirology of the DNA viruses of eukaryotes.
Journal article
Barreat JGN. and Katzourakis A., (2021), Trends Microbiol
A mechanistic evolutionary model explains the time-dependent pattern of substitution rates in viruses.
Journal article
Ghafari M. et al, (2021), Curr Biol
Lessons for preparedness and reasons for concern from the early COVID-19 epidemic in Iran.
Journal article
Ghafari M. et al, (2021), Epidemics, 36
Excess deaths associated with the Iranian COVID-19 epidemic: A province-level analysis.
Journal article
Ghafari M. et al, (2021), Int J Infect Dis
Estimates of anti-SARS-CoV-2 antibody seroprevalence in Iran.
Journal article
Ghafari M. et al, (2021), Lancet Infect Dis
Rapid evidence review to inform safe return to campus in the context of coronavirus disease 2019 (COVID-19).
Journal article
Greenhalgh T. et al, (2021), Wellcome Open Res, 6
HIV-1 p24Gag adaptation to modern and archaic HLA-allele frequency differences in ethnic groups contributes to viral subtype diversification.
Journal article
Kist NC. et al, (2020), Virus Evol, 6
Have deaths from COVID-19 in Europe plateaued due to herd immunity?
Journal article
Okell LC. et al, (2020), Lancet, 395, e110 - e111
The Potential Role of Endogenous Viral Elements in the Evolution of Bats as Reservoirs for Zoonotic Viruses.
Journal article
Skirmuntt EC. et al, (2020), Annu Rev Virol
The evolution of endogenous retroviral envelope genes in bats and their potential contribution to host biology.
Journal article
Skirmuntt EC. and Katzourakis A., (2019), Virus Res, 270
The First Co-Opted Endogenous Foamy Viruses and the Evolutionary History of Reptilian Foamy Viruses.
Journal article
Aiewsakun P. et al, (2019), Viruses, 11