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Publications

Ecological and evolutionary dynamics of cell-virus-virophage systems.

Nino Barreat JG. and Katzourakis A., (2024), PLoS Comput Biol, 20

The evolution of SARS-CoV-2.

Markov PV. et al, (2023), Nat Rev Microbiol

Four principles to establish a universal virus taxonomy.

Simmonds P. et al, (2023), PLoS Biol, 21

Discovery of novel papillomaviruses in the critically endangered Malayan and Chinese pangolins.

Nino Barreat JG. et al, (2023), Biol Lett, 19

Evolutionary Analysis of Placental Orthologues Reveals Two Ancient DNA Virus Integrations.

Nino Barreat JG. and Katzourakis A., (2022), J Virol

A framework for reconstructing SARS-CoV-2 transmission dynamics using excess mortality data.

Ghafari M. et al, (2022), Nat Commun, 13

Purifying Selection Determines the Short-Term Time Dependency of Evolutionary Rates in SARS-CoV-2 and pH1N1 Influenza.

Ghafari M. et al, (2022), Mol Biol Evol, 39

Paleovirology of the DNA viruses of eukaryotes.

Barreat JGN. and Katzourakis A., (2021), Trends Microbiol

A mechanistic evolutionary model explains the time-dependent pattern of substitution rates in viruses.

Ghafari M. et al, (2021), Curr Biol

Lessons for preparedness and reasons for concern from the early COVID-19 epidemic in Iran.

Ghafari M. et al, (2021), Epidemics, 36

Excess deaths associated with the Iranian COVID-19 epidemic: A province-level analysis.

Ghafari M. et al, (2021), Int J Infect Dis

Estimates of anti-SARS-CoV-2 antibody seroprevalence in Iran.

Ghafari M. et al, (2021), Lancet Infect Dis

Rapid evidence review to inform safe return to campus in the context of coronavirus disease 2019 (COVID-19).

Greenhalgh T. et al, (2021), Wellcome Open Res, 6

HIV-1 p24Gag adaptation to modern and archaic HLA-allele frequency differences in ethnic groups contributes to viral subtype diversification.

Kist NC. et al, (2020), Virus Evol, 6

Have deaths from COVID-19 in Europe plateaued due to herd immunity?

Okell LC. et al, (2020), Lancet, 395, e110 - e111

The Potential Role of Endogenous Viral Elements in the Evolution of Bats as Reservoirs for Zoonotic Viruses.

Skirmuntt EC. et al, (2020), Annu Rev Virol

The evolution of endogenous retroviral envelope genes in bats and their potential contribution to host biology.

Skirmuntt EC. and Katzourakis A., (2019), Virus Res, 270

The First Co-Opted Endogenous Foamy Viruses and the Evolutionary History of Reptilian Foamy Viruses.

Aiewsakun P. et al, (2019), Viruses, 11

Modular nature of simian foamy virus genomes and their evolutionary history.

Aiewsakun P. et al, (2019), Virus Evol, 5

Prisoners of war - host adaptation and its constraints on virus evolution.

Simmonds P. et al, (2019), Nat Rev Microbiol, 17, 321 - 328

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