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Publications

A comprehensive genomics solution for HIV surveillance and clinical monitoring in low income settings.

Bonsall D. et al, (2020), J Clin Microbiol

Ethics of instantaneous contact tracing using mobile phone apps in the control of the COVID-19 pandemic.

Parker MJ. et al, (2020), J Med Ethics, 46, 427 - 431

Quantifying SARS-CoV-2 transmission suggests epidemic control with digital contact tracing.

Ferretti L. et al, (2020), Science

Genomic Epidemiology Reconstructs the Introduction and Spread of Zika Virus in Central America and Mexico.

Thézé J. et al, (2018), Cell Host Microbe, 23, 855 - 864.e7

Rolling circle amplification and nanopore-based deep sequencing of full-length HBV genomes

Mcnaughton A. et al, (2018), JOURNAL OF HEPATOLOGY, 68, S762 - S762

PHYLOSCANNER: Inferring Transmission from Within- and Between-Host Pathogen Genetic Diversity.

Wymant C. et al, (2018), Mol Biol Evol, 35, 719 - 733

Detection and Characterization of Homologues of Human Hepatitis Viruses and Pegiviruses in Rodents and Bats in Vietnam.

Van Nguyen D. et al, (2018), Viruses, 10

Characterization of hepatitis C virus resistance to grazoprevir reveals complex patterns of mutations following on-treatment breakthrough that are not observed at relapse.

Bonsall D. et al, (2018), Infect Drug Resist, 11, 1119 - 1135

Genome-to-genome analysis highlights the effect of the human innate and adaptive immune systems on the hepatitis C virus.

Ansari MA. et al, (2017), Nat Genet, 49, 666 - 673

First Complete Genome Sequences of Zika Virus Isolated from Febrile Patient Sera in Ecuador.

Márquez S. et al, (2017), Genome Announc, 5

Characterization of the Specificity, Functionality, and Durability of Host T-Cell Responses Against the Full-Length Hepatitis E Virus.

Brown A. et al, (2016), Hepatology, 64, 1934 - 1950

Comparison of Next-Generation Sequencing Technologies for Comprehensive Assessment of Full-Length Hepatitis C Viral Genomes.

Thomson E. et al, (2016), J Clin Microbiol, 54, 2470 - 2484

Highly-Immunogenic Virally-Vectored T-cell Vaccines Cannot Overcome Subversion of the T-cell Response by HCV during Chronic Infection.

Swadling L. et al, (2016), Vaccines (Basel), 4

Evaluation of Viremia Frequencies of a Novel Human Pegivirus by Using Bioinformatic Screening and PCR.

Bonsall D. et al, (2016), Emerg Infect Dis, 22, 671 - 678

SEQUENCING METHODS DEVELOPED FOR HEPATITIS C IDENTIFIES A NEW VIRUS, HUMAN HEPEGIVIRUS 1, IN PATIENTS WITH ADVANCED CIRRHOSIS

Bonsall DG. et al, (2016), JOURNAL OF HEPATOLOGY, 64, S414 - S415

Characterization of Hepatitis C Virus Recombination in Cameroon by Use of Nonspecific Next-Generation Sequencing.

Iles JC. et al, (2015), J Clin Microbiol, 53, 3155 - 3164

Dynamics of immunoglobulin sequence diversity in HIV-1 infected individuals.

Hoehn KB. et al, (2015), Philos Trans R Soc Lond B Biol Sci, 370

ve-SEQ: Robust, unbiased enrichment for streamlined detection and whole-genome sequencing of HCV and other highly diverse pathogens.

Bonsall D. et al, (2015), F1000Res, 4

A FULLY-AUTOMATED PIPELINE FOR SEQUENCING WHOLE VIRAL GENOMES WITHOUT VIRUS-SPECIFIC PCR AMPLIFICATION TO DETERMINE HCV RESISTANCE TO ANTIVIRAL THERAPY

Bonsall DG. et al, (2014), JOURNAL OF HEPATOLOGY, 60, S503 - S503

Phylogenetic analysis consistent with a clinical history of sexual transmission of HIV-1 from a single donor reveals transmission of highly distinct variants.

English S. et al, (2011), Retrovirology, 8

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