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Publications

Targeted metagenomics reveals association between severity and pathogen co-detection in infants with respiratory syncytial virus.

Lin G-L. et al, (2024), Nat Commun, 15

Prevalence of persistent SARS-CoV-2 in a large community surveillance study.

Ghafari M. et al, (2024), Nature

Risk of SARS-CoV-2 reinfection during multiple Omicron variant waves in the UK general population.

Wei J. et al, (2024), Nat Commun, 15

Demographics of sources of HIV-1 transmission in Zambia: a molecular epidemiology analysis in the HPTN 071 PopART study.

Hall M. et al, (2023), Lancet Microbe

Phylogenetic Analysis of Hepatitis C Virus Infections in a Large Belgian Cohort Using Next-Generation Sequencing of Full-Length Genomes.

Christensen KT. et al, (2023), Viruses, 15

Longitudinal population-level HIV epidemiologic and genomic surveillance highlights growing gender disparity of HIV transmission in Uganda.

Monod M. et al, (2023), Nat Microbiol

Validation of an HIV whole genome sequencing method for HIV drug resistance testing in an Australian clinical microbiology laboratory

Jenkins F. et al, (2023), Journal of medical virology, 95

Lineage replacement and evolution captured by 3 years of the United Kingdom Coronavirus (COVID-19) Infection Survey.

Lythgoe KA. et al, (2023), Proc Biol Sci, 290

Correction: Viral burden is associated with age, vaccination, and viral variant in a population-representative study of SARS-CoV-2 that accounts for time-since-infection-related sampling bias.

Fryer HR. et al, (2023), PLoS Pathog, 19

Limited emergence of resistance to integrase strand transfer inhibitors (INSTIs) in ART-experienced participants failing dolutegravir-based antiretroviral therapy: a cross-sectional analysis of a Northeast Nigerian cohort.

Abdullahi A. et al, (2023), J Antimicrob Chemother, 78, 2000 - 2007

Viral burden is associated with age, vaccination, and viral variant in a population-representative study of SARS-CoV-2 that accounts for time-since-infection-related sampling bias.

Fryer HR. et al, (2023), PLoS Pathog, 19

COVID-19 vaccination, risk-compensatory behaviours, and contacts in the UK.

Buckell J. et al, (2023), Sci Rep, 13

Protection against SARS-CoV-2 Omicron BA.4/5 variant following booster vaccination or breakthrough infection in the UK.

Wei J. et al, (2023), Nat Commun, 14

Investigation of hospital discharge cases and SARS-CoV-2 introduction into Lothian care homes

Cotton S. et al, (2023), Journal of Hospital Infection, 135, 28 - 36

COVID-19 due to the B.1.617.2 (Delta) variant compared to B.1.1.7 (Alpha) variant of SARS-CoV-2: a prospective observational cohort study

Kläser K. et al, (2022), Scientific Reports, 12

Genomic assessment of quarantine measures to prevent SARS-CoV-2 importation and transmission

Aggarwal D. et al, (2022), Nature Communications, 13

Genomic epidemiology of SARS-CoV-2 in a university outbreak setting and implications for public health planning

Nickbakhsh S. et al, (2022), Scientific Reports, 12

The mutational spectrum of SARS-CoV-2 genomic and antigenomic RNA.

Zhao L. et al, (2022), Proc Biol Sci, 289

Publisher Correction: SARS-CoV-2 Omicron is an immune escape variant with an altered cell entry pathway.

Willett BJ. et al, (2022), Nat Microbiol, 7

Full-genome next-generation sequencing of hepatitis C virus to assess the accuracy of genotyping by the commercial assay LiPA and the prevalence of resistance-associated substitutions in a Belgian cohort.

Christensen KT. et al, (2022), J Clin Virol, 155

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