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Publications

Epidemiological and evolutionary considerations of SARS-CoV-2 vaccine dosing regimes.

Saad-Roy CM. et al, (2021), Science

Local Transmission of SARS-CoV-2 Lineage B.1.1.7, Brazil, December 2020.

Claro IM. et al, (2021), Emerg Infect Dis, 27, 970 - 972

Resurgence of COVID-19 in Manaus, Brazil, despite high seroprevalence.

Sabino EC. et al, (2021), Lancet, 397, 452 - 455

Addendum: A dynamic nomenclature proposal for SARS-CoV-2 lineages to assist genomic epidemiology.

Rambaut A. et al, (2021), Nat Microbiol

Establishment and lineage dynamics of the SARS-CoV-2 epidemic in the UK.

du Plessis L. et al, (2021), Science

Evaluating the Effects of SARS-CoV-2 Spike Mutation D614G on Transmissibility and Pathogenicity.

Volz E. et al, (2021), Cell, 184, 64 - 75.e11

Phylodynamics for cell biologists.

Stadler T. et al, (2021), Science (New York, N.Y.), 371

Three-quarters attack rate of SARS-CoV-2 in the Brazilian Amazon during a largely unmitigated epidemic.

Buss LF. et al, (2020), Science

Total infectomes of 162 SARS-CoV-2 cases using meta-transcriptomic sequencing.

Zhou H. et al, (2020), J Infect

Publisher Correction: Parallel evolution in the emergence of highly pathogenic avian influenza A viruses.

Escalera-Zamudio M. et al, (2020), Nat Commun, 11

Epidemiological hypothesis testing using a phylogeographic and phylodynamic framework.

Dellicour S. et al, (2020), Nat Commun, 11

Establishment & lineage dynamics of the SARS-CoV-2 epidemic in the UK

du Plessis L. et al, (2020)

A computationally tractable birth-death model that combines phylogenetic and epidemiological data

Zarebski AE. et al, (2020)

Crowding and the shape of COVID-19 epidemics.

Rader B. et al, (2020), Nat Med

Clinical, immunological and virological characterization of COVID-19 patients that test re-positive for SARS-CoV-2 by RT-PCR.

Lu J. et al, (2020), EBioMedicine, 59

Fatal outcome of chikungunya virus infection in Brazil.

Lima STSD. et al, (2020), Clin Infect Dis

Genomic Surveillance of Yellow Fever Virus Epizootic in São Paulo, Brazil, 2016 - 2018.

Hill SC. et al, (2020), PLoS Pathog, 16

Epidemiological and clinical characteristics of the COVID-19 epidemic in Brazil.

de Souza WM. et al, (2020), Nat Hum Behav

Serial Interval Distribution of SARS-CoV-2 Infection in Brazil.

Prete CA. et al, (2020), J Travel Med

Evolution and epidemic spread of SARS-CoV-2 in Brazil.

Candido DS. et al, (2020), Science

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