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Publications

EPINEST, an agent-based model to simulate epidemic dynamics in large-scale poultry production and distribution networks.

Pinotti F. et al, (2024), PLoS Comput Biol, 20

Darwin review: the evolution of virulence in human pathogens.

Gupta S., (2024), Proc Biol Sci, 291

Trial of Selective Early Treatment of Patent Ductus Arteriosus with Ibuprofen.

Gupta S. et al, (2024), N Engl J Med, 390, 314 - 325

Shifting patterns of dengue three years after Zika virus emergence in Brazil.

Pinotti F. et al, (2024), Nat Commun, 15

The metabolic, virulence and antimicrobial resistance profiles of colonising Streptococcus pneumoniae shift after PCV13 introduction in urban Malawi.

Obolski U. et al, (2023), Nat Commun, 14

Evolution of pathogen virulence: Studying the complex interplay of pathogen interactions, virulence and transmission helps us understand how they evolve and spread.

Gupta S., (2023), EMBO Rep

Modelling the transmission dynamics of H9N2 avian influenza viruses in a live bird market

Pinotti F. et al, (2023)

Shifting patterns of dengue three years after Zika virus emergence in Brazil

Pinotti F. et al, (2023)

As Omicron Takes Hold and Other New Variants Arise, COVID-19 Testing Remains the Universally Agreed Tool to Effect Transition From Pandemic to Endemic State.

Miller MB. et al, (2022), Front Public Health, 10

Malaria infection and severe disease risks in Africa.

Paton RS. et al, (2021), Science, 373, 926 - 931

Fatal COVID-19 outcomes are associated with an antibody response targeting epitopes shared with endemic coronaviruses

McNaughton AL. et al, (2021)

The antigenic anatomy of SARS-CoV-2 receptor binding domain.

Dejnirattisai W. et al, (2021), Cell, 184, 2183 - 2200.e22

Convalescent plasma therapy for the treatment of patients with COVID-19: Assessment of methods available for antibody detection and their correlation with neutralising antibody levels.

Harvala H. et al, (2020), Transfus Med

Leveraging Epidemiological Principles to Evaluate Sweden's COVID-19 Response.

Baral S. et al, (2020), Ann Epidemiol

Detection of neutralising antibodies to SARS-CoV-2 to determine population exposure in Scottish blood donors between March and May 2020.

Thompson CP. et al, (2020), Euro Surveill, 25

SARS-CoV-2 antibody prevalence, titres and neutralising activity in an antenatal cohort, United Kingdom, 14 April to 15 June 2020.

Lumley SF. et al, (2020), Euro Surveill, 25

In Memoriam Professor Lord Robert May of Oxford (1936-2020)

Gupta S., (2020), TRENDS IN ECOLOGY & EVOLUTION, 35

Potential impact of individual exposure histories to endemic human coronaviruses on age-dependence in severity of COVID-19

Pinotti F. et al, (2020)

High residual carriage of vaccine-serotype Streptococcus pneumoniae after introduction of pneumococcal conjugate vaccine in Malawi.

Swarthout TD. et al, (2020), Nat Commun, 11

Detection of neutralising antibodies to SARS coronavirus 2 to determine population exposure in Scottish blood donors between March and May 2020

Thompson CP. et al, (2020)

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