Aris Katzourakis
Professor of Evolution and Genomics
- Tutorial Fellow of St Hilda's College
Research Interests
My research interests include viral evolution, genome evolution, and mobile genetic element evolution. This research is primarily focussed on studying the long term evolutionary biology of viruses. This is facilitated by the discovery of a rich genomic 'fossil record' of ancient viral sequences within the genomes of their hosts, leading to the emerging field of paleovirology.
Paleovirological techniques can be applied to endogenous retroviruses (ERVs) and endogenous viral elements (EVEs) more generally. For example, this can include using genomic sequence data to infer the evolutionary biology of retroviruses and their association with their vertebrate host genomes and immune responses, as well as modelling the dynamics of this evolutionary process. Other interests include present day viral pathogen evolution and epidemiology (e.g. HIV/HTLV), and evolutionary inference from both animal and viral genomic sequence data.
Additional Information: I am an associate editor of BMC Evolutionary Biology, and serve on the editorial board of Evolutionary Biology.
Recent publications
HI-FEVER: a Nextflow pipeline for the high-throughput discovery and annotation of endogenous viral elements.
Journal article
Muñoz-Baena L. et al, (2025), Bioinformatics, 41
Endogenous viral elements in termite genomes reveal extensive diversity of deltaviruses and provide insights into their origins.
Journal article
Barreat JGN. et al, (2025), Cell Rep, 44
It should be free to apply to graduate school.
Journal article
Fernando B. et al, (2025), Nature, 643
Deep mining reveals the diversity of endogenous viral elements in vertebrate genomes.
Journal article
Nino Barreat JG. and Katzourakis A., (2024), Nat Microbiol, 9, 3013 - 3024
Limitations of current high-throughput sequencing technologies lead to biased expression estimates of endogenous retroviral elements.
Journal article
Kitsou K. et al, (2024), NAR Genom Bioinform, 6
